JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MANSC1_chr12_12321056_12355242	0/0	t0051	4237	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0052	4238	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0053	4238	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0054	4240	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0055	4239	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0056	4242	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0057	4240	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0058	4241	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0059	4242	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0060	4242	1	0	0	0	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0061	4242	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0062	4242	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0063	4242	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0064	4243	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0065	4244	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0066	4242	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0067	4246	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0068	4243	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0069	4246	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0070	4244	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0071	4246	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0072	4244	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0073	4244	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0074	4244	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0075	4248	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0076	4248	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0077	4249	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0078	4247	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0079	4250	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0080	4248	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0081	4248	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0082	4250	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0083	4250	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0084	4243	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0085	4243	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0086	4245	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0087	4235	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0088	4238	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0089	4239	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0090	4242	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0091	4241	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0092	4244	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0093	4244	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0094	4247	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0095	4250	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0096	4246	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0097	4249	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0098	4231	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0099	4227	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0100	4238	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242