JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MANSC1_chr12_12321056_12355242	0/0	t0101	4237	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	1/0	t0102	4237	1	0	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0103	4239	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0104	4239	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0105	4239	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0106	4242	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0107	4241	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0108	4246	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0109	4244	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0110	4245	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0111	4245	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0112	4245	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0113	4247	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0114	4245	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0115	4248	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0116	4245	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0117	4247	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0118	4249	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0119	4250	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0120	4251	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0121	4243	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0122	4243	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0123	4237	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0124	4240	1	0	0	0	0	1	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0125	4235	1	1	0	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0126	4234	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0127	4237	1	0	0	0	1	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0128	4236	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0129	4238	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0130	4237	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0131	4237	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0132	4238	1	0	1	0	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC1_chr12_12321056_12355242	0/0	t0133	4241	1	0	0	1	0	0	copy fasta	MANSC1	chr12	12321056	12355242
MANSC4_chr12_27757427_27785236	1/1	t0001	645	332	74	67	141	15	33	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0002	648	61	1	7	46	1	6	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0003	645	4	4	0	0	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0004	645	3	3	0	0	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0005	645	3	3	0	0	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0006	645	2	1	0	0	0	1	copy fasta	MANSC4	chr12	27757427	27785236
MANSC4_chr12_27757427_27785236	0/0	t0007	645	1	0	0	1	0	0	copy fasta	MANSC4	chr12	27757427	27785236
MAOA_chrX_43651299_43751817	1/0	t0001	2348	144	25	18	78	5	17	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/1	t0002	2348	126	40	19	55	6	5	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0003	2348	2	2	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0004	2348	2	2	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0005	2348	1	0	0	0	0	1	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0006	2348	1	0	0	0	0	1	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0007	2349	1	0	1	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0008	2348	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0009	2348	1	0	1	0	0	0	copy fasta	MAOA	chrX	43651299	43751817
MAOA_chrX_43651299_43751817	0/0	t0010	2348	1	1	0	0	0	0	copy fasta	MAOA	chrX	43651299	43751817