Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQP8_chr16_25211947_25233932	0/0	t0008	540	1	1	0	0	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0009	540	1	0	0	1	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP8_chr16_25211947_25233932	0/0	t0010	540	1	0	0	1	0	0	copy fasta	AQP8	chr16	25211947	25233932
AQP9_chr15_58133381_58190911	0/1	t0001	1962	250	28	54	126	13	28	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	1/0	t0002	1962	57	23	5	23	2	3	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0003	1962	50	2	6	35	1	6	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0004	1962	8	8	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0005	1962	4	3	1	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0006	1962	4	0	1	0	1	2	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0007	1962	4	4	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0008	1961	4	3	1	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0009	1962	3	0	3	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0010	1962	3	3	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0011	1962	3	3	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0012	1962	3	0	3	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0013	1962	2	0	0	0	0	2	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0014	1962	2	2	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0015	1962	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0016	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0017	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0018	1962	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0019	1962	1	0	1	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0020	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0021	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0022	1962	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0023	1962	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0024	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0025	1962	1	0	1	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0026	1962	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0027	1962	1	0	0	0	1	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0028	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0029	1962	1	0	0	1	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0030	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0031	1961	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0032	1962	1	1	0	0	0	0	copy fasta	AQP9	chr15	58133381	58190911
AQP9_chr15_58133381_58190911	0/0	t0033	1962	1	0	0	0	0	1	copy fasta	AQP9	chr15	58133381	58190911
AQR_chr15_34846782_34974742	0/0	t0001	5137	57	2	9	38	3	5	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/1	t0002	5140	49	1	8	34	0	5	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0003	5137	39	8	13	11	1	6	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0004	5140	12	0	1	11	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	1/0	t0005	5140	10	7	0	0	0	2	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0006	5137	10	0	0	10	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0007	5138	9	2	4	0	1	2	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0008	5137	8	7	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0009	5146	5	5	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0010	5137	5	5	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0011	5140	5	5	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0012	5137	4	4	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0013	5139	4	0	0	4	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0014	5141	4	0	1	3	0	0	copy fasta	AQR	chr15	34846782	34974742