Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQR_chr15_34846782_34974742	0/0	t0015	5139	4	1	0	3	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0016	5138	4	3	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0017	5137	4	0	2	0	0	2	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0018	5141	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0019	5142	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0020	5140	3	0	0	3	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0021	5138	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0022	5137	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0023	5139	3	0	0	3	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0024	5138	3	3	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0025	5139	3	0	0	2	1	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0026	5141	3	0	0	3	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0027	5141	2	1	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0028	5138	2	0	0	1	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0029	5137	2	2	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0030	5137	2	0	0	1	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0031	5140	2	0	0	2	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0032	5139	1	0	0	0	1	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0033	5138	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0034	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0035	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0036	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0037	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0038	5140	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0039	5141	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0040	5139	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0041	5140	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0042	5140	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0043	5140	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0044	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0045	5140	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0046	5139	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0047	5138	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0048	5139	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0049	5140	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0050	5139	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0051	5136	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0052	5138	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0053	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0054	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0055	5138	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0056	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0057	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0058	5142	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0059	5142	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0060	5138	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0061	5140	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0062	5141	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0063	5140	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0064	5140	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742