Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AQR_chr15_34846782_34974742	0/0	t0065	5139	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0066	5140	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0067	5140	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0068	5138	1	0	0	1	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0069	5138	1	0	1	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0070	5137	1	0	0	0	1	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0071	5139	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0072	5136	1	0	0	0	0	1	copy fasta	AQR	chr15	34846782	34974742
AQR_chr15_34846782_34974742	0/0	t0073	5137	1	1	0	0	0	0	copy fasta	AQR	chr15	34846782	34974742
ARAF_chrX_47556205_47576908	1/1	t0001	558	311	73	53	143	11	29	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	t0002	558	2	0	0	0	0	2	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	t0003	558	2	2	0	0	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	t0004	558	2	1	1	0	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAF_chrX_47556205_47576908	0/0	t0005	555	1	0	0	1	0	0	copy fasta	ARAF	chrX	47556205	47576908
ARAP1_chr11_72680069_72757408	1/1	t0001	804	315	87	64	124	8	30	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0002	804	31	4	8	9	2	8	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0003	804	4	1	3	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0004	804	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0005	804	1	0	1	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0006	804	1	0	0	1	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP1_chr11_72680069_72757408	0/0	t0007	804	1	1	0	0	0	0	copy fasta	ARAP1	chr11	72680069	72757408
ARAP2_chr4_36061004_36249514	0/0	t0001	2399	85	22	16	26	6	15	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/1	t0002	2399	77	7	23	33	7	6	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	1/0	t0003	2399	76	24	18	26	1	6	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0004	2400	7	6	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0005	2399	7	5	2	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0006	2399	3	3	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0007	2399	2	2	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0008	2399	2	0	0	2	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0009	2399	2	1	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0010	2399	2	2	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0011	2399	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0012	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0013	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0014	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0015	2400	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0016	2399	1	0	0	1	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0017	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0018	2399	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0019	2400	1	0	0	1	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0020	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0021	2400	1	0	0	1	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0022	2399	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0023	2400	1	1	0	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0024	2399	1	0	0	0	0	1	copy fasta	ARAP2	chr4	36061004	36249514
ARAP2_chr4_36061004_36249514	0/0	t0025	2399	1	0	1	0	0	0	copy fasta	ARAP2	chr4	36061004	36249514
ARAP3_chr5_141648402_141687230	1/1	t0001	624	404	89	75	176	16	46	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	t0002	624	5	5	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	t0003	624	3	2	1	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230
ARAP3_chr5_141648402_141687230	0/0	t0004	624	3	3	0	0	0	0	copy fasta	ARAP3	chr5	141648402	141687230