JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBOAT1_chr6_20094684_20217469	0/0	t0075	2837	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0076	2838	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0077	2836	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT1_chr6_20094684_20217469	0/0	t0078	2835	1	1	0	0	0	0	copy fasta	MBOAT1	chr6	20094684	20217469
MBOAT2_chr2_8847690_9008684	0/0	t0001	6060	27	19	3	4	0	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/1	t0002	6060	26	0	9	12	0	4	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0003	6065	10	1	3	0	0	6	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0004	6063	8	5	0	1	1	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0005	6058	7	6	1	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0006	6060	6	0	0	2	0	4	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0007	6060	5	4	1	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0008	6062	4	1	2	0	0	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0009	6060	3	2	1	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0010	6060	3	0	1	0	0	2	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0011	6055	3	3	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0012	6057	3	2	1	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0013	6063	3	3	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0014	6063	3	1	2	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0015	6062	3	3	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	1/0	t0016	6060	3	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0017	6057	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0018	6060	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0019	6057	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0020	6060	2	0	0	2	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0021	6063	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0022	6063	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0023	6062	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0024	6060	2	1	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0025	6060	2	0	0	0	1	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0026	6059	2	2	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0027	6060	2	0	1	0	0	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0028	6057	2	0	2	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0029	6062	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0030	6060	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0031	6057	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0032	6062	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0033	6065	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0034	6065	1	0	0	0	1	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0035	6063	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0036	6063	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0037	6060	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0038	6062	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0039	6060	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0040	6061	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0041	6060	1	0	1	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0042	6060	1	0	0	0	0	1	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0043	6060	1	0	0	0	1	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0044	6060	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0045	6058	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0046	6063	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684