JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MBOAT2_chr2_8847690_9008684	0/0	t0047	6060	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0048	6071	1	1	0	0	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT2_chr2_8847690_9008684	0/0	t0049	6057	1	0	0	1	0	0	copy fasta	MBOAT2	chr2	8847690	9008684
MBOAT4_chr8_30126671_30149665	1/1	t0001	337	278	95	26	126	8	21	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	t0002	337	101	3	26	48	8	16	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT4_chr8_30126671_30149665	0/0	t0003	337	1	0	0	0	0	1	copy fasta	MBOAT4	chr8	30126671	30149665
MBOAT7_chr19_54168415_54194580	0/0	t0001	876	182	43	36	81	5	17	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0002	876	72	18	14	23	4	13	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0003	872	62	1	24	28	6	3	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/1	t0004	876	32	15	3	5	1	7	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0005	876	7	7	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0006	872	5	5	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0007	876	5	0	3	0	2	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0008	876	1	0	0	1	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0009	876	1	0	1	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0010	876	1	1	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0011	876	1	1	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0012	876	1	1	0	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0013	876	1	0	1	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0014	876	1	0	1	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBOAT7_chr19_54168415_54194580	0/0	t0015	876	1	0	1	0	0	0	copy fasta	MBOAT7	chr19	54168415	54194580
MBP_chr18_76973833_77137783	1/0	t0001	1824	86	20	10	48	1	6	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0002	1824	38	5	7	24	1	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0003	1824	34	3	7	15	4	5	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0004	1824	30	1	13	9	3	4	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0005	1824	26	2	8	14	0	2	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0006	1824	25	1	5	13	2	4	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0007	1824	20	3	1	15	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0008	1824	17	0	2	10	1	4	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0009	1824	16	8	2	1	0	5	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0010	1824	13	6	1	5	1	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0011	1824	9	9	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0012	1824	5	3	1	0	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0013	1824	5	5	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0014	1824	5	0	3	2	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0015	1824	5	0	1	2	0	2	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0016	1824	5	0	3	1	1	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0017	1825	4	4	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0018	1824	3	2	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0019	1824	3	0	1	1	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0020	1824	3	3	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0021	1824	3	0	1	0	0	2	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0022	1824	2	2	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0023	1824	2	2	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0024	1824	2	1	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0025	1824	2	1	1	0	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0026	1824	2	0	0	2	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0027	1824	2	0	0	1	0	1	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0028	1824	2	0	0	2	0	0	copy fasta	MBP	chr18	76973833	77137783
MBP_chr18_76973833_77137783	0/0	t0029	1824	2	2	0	0	0	0	copy fasta	MBP	chr18	76973833	77137783