JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDFIC2_chr3_70189479_70317638	0/0	t0012	2536	2	0	0	2	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0013	2536	2	0	2	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0014	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0015	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0016	2536	1	0	1	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0017	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0018	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0019	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0020	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0021	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0022	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0023	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0024	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0025	2536	1	0	1	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0026	2536	1	0	0	0	0	1	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0027	2536	1	1	0	0	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC2_chr3_70189479_70317638	0/0	t0028	2536	1	0	0	1	0	0	copy fasta	MDFIC2	chr3	70189479	70317638
MDFIC_chr7_114917094_115024917	0/0	t0001	4633	52	8	1	38	0	5	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0002	4637	37	21	8	0	1	7	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0003	4637	22	3	8	7	2	2	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0004	4638	21	0	4	12	3	2	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0005	4636	20	2	6	11	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0006	4642	14	0	0	14	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0007	4633	13	1	9	0	2	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0008	4633	10	5	3	0	2	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0009	4637	10	2	8	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0010	4637	9	3	0	4	1	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0011	4637	9	3	0	2	0	4	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0012	4633	8	3	3	0	2	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0013	4633	8	0	0	8	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0014	4629	7	0	0	7	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0015	4632	7	0	2	5	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0016	4634	7	0	1	6	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	1/0	t0017	4633	5	0	2	1	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0018	4641	5	0	0	4	1	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0019	4625	4	3	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0020	4638	4	0	4	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0021	4640	4	0	0	4	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0022	4625	3	3	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/1	t0023	4641	3	2	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0024	4644	3	0	1	2	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0025	4633	3	0	2	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0026	4633	3	0	0	2	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0027	4637	2	2	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0028	4638	2	0	0	0	0	2	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0029	4642	2	0	0	0	0	2	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0030	4645	2	0	0	2	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0031	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0032	4633	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0033	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917