JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDFIC_chr7_114917094_115024917	0/0	t0034	4633	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0035	4637	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0036	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0037	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0038	4636	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0039	4634	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0040	4609	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0041	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0042	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0043	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0044	4633	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0045	4634	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0046	4633	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0047	4637	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0048	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0049	4637	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0050	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0051	4644	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0052	4645	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0053	4645	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0054	4646	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0055	4649	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0056	4636	1	0	0	1	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0057	4637	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0058	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0059	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0060	4633	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0061	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0062	4609	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0063	4625	1	0	0	0	0	1	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0064	4637	1	0	1	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFIC_chr7_114917094_115024917	0/0	t0065	4637	1	1	0	0	0	0	copy fasta	MDFIC	chr7	114917094	115024917
MDFI_chr6_41633468_41659244	0/1	t0001	866	334	52	62	180	10	29	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	1/0	t0002	866	55	14	16	8	6	10	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0003	866	18	18	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0004	866	16	0	2	14	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0005	866	11	0	4	0	2	5	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0006	866	6	0	0	6	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0007	866	3	3	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0008	866	3	3	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0009	866	2	2	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0010	866	2	0	0	0	0	2	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0011	866	2	2	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0012	866	2	2	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0013	866	1	0	0	0	0	1	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0014	866	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0015	866	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0016	866	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0017	866	1	1	0	0	0	0	copy fasta	MDFI	chr6	41633468	41659244
MDFI_chr6_41633468_41659244	0/0	t0018	866	1	0	0	1	0	0	copy fasta	MDFI	chr6	41633468	41659244