JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDM2_chr12_68803177_68850544	0/0	t0058	6001	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0059	5993	1	0	0	0	1	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0060	5993	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0061	5994	1	0	1	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0062	5998	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0063	5991	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0064	5991	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0065	5992	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0066	5992	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0067	5992	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0068	5969	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0069	5975	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0070	5970	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0071	5980	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0072	5980	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0073	5986	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0074	5995	1	0	0	0	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0075	5998	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0076	5998	1	1	0	0	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0077	5986	1	0	0	0	0	1	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0078	5986	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM2_chr12_68803177_68850544	0/0	t0079	5986	1	0	0	1	0	0	copy fasta	MDM2	chr12	68803177	68850544
MDM4_chr1_204511406_204563120	0/0	t0001	8570	58	0	11	37	3	7	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0002	8571	53	3	2	43	2	3	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	1/1	t0003	8578	40	14	9	10	2	3	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0004	8575	14	0	3	10	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0005	8568	9	6	1	0	0	2	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0006	8588	8	0	0	8	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0007	8587	7	0	0	6	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0008	8570	6	0	6	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0009	8590	5	1	0	4	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0010	8572	5	0	0	5	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0011	8594	4	4	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0012	8572	4	0	2	1	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0013	8571	4	0	0	4	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0014	8571	4	0	0	3	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0015	8564	3	0	2	0	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0016	8572	3	3	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0017	8575	3	3	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0018	8591	3	1	0	2	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0019	8576	3	0	0	3	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0020	8569	3	0	1	1	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0021	8571	3	0	1	1	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0022	8579	3	0	0	0	0	3	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0023	8579	3	0	2	0	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0024	8573	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0025	8592	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0026	8567	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0027	8571	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0028	8574	2	0	2	0	0	0	copy fasta	MDM4	chr1	204511406	204563120