JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDM4_chr1_204511406_204563120	0/0	t0029	8571	2	0	1	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0030	8570	2	0	1	0	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0031	8579	2	0	2	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0032	8579	2	0	1	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0033	8576	2	2	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0034	8573	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0035	8572	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0036	8571	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0037	8571	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0038	8576	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0039	8572	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0040	8570	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0041	8571	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0042	8571	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0043	8575	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0044	8576	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0045	8576	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0046	8587	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0047	8587	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0048	8590	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0049	8587	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0050	8588	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0051	8591	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0052	8589	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0053	8592	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0054	8591	1	0	0	0	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0055	8594	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0056	8592	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0057	8597	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0058	8593	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0059	8595	1	0	0	0	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0060	8595	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0061	8598	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0062	8599	1	0	0	0	0	1	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0063	8584	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0064	8570	1	0	0	0	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0065	8570	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0066	8574	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0067	8575	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0068	8574	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0069	8575	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0070	8576	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0071	8575	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0072	8576	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0073	8577	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0074	8584	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0075	8580	1	0	0	0	1	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0076	8581	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0077	8574	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0078	8570	1	0	0	0	0	1	copy fasta	MDM4	chr1	204511406	204563120