JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MDM4_chr1_204511406_204563120	0/0	t0129	8578	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0130	8579	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0131	8579	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0132	8579	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0133	8578	1	0	1	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0134	8567	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0135	8596	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0136	8599	1	1	0	0	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDM4_chr1_204511406_204563120	0/0	t0137	8577	1	0	0	1	0	0	copy fasta	MDM4	chr1	204511406	204563120
MDN1_chr6_89637498_89824794	1/0	t0001	1695	212	51	41	91	9	19	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/1	t0002	1695	37	10	7	4	2	13	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0003	1695	18	0	6	4	2	6	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0004	1695	4	0	1	3	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0005	1699	3	3	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0006	1695	3	0	0	3	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0007	1695	3	1	2	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0008	1695	2	0	2	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0009	1695	1	0	0	0	1	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0010	1695	1	0	1	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0011	1695	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0012	1695	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0013	1695	1	0	0	1	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0014	1695	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0015	1695	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDN1_chr6_89637498_89824794	0/0	t0016	1695	1	1	0	0	0	0	copy fasta	MDN1	chr6	89637498	89824794
MDP1_chr14_24208943_24221066	1/1	t0001	193	395	81	68	185	15	44	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	t0002	193	7	7	0	0	0	0	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	t0003	193	1	0	0	0	1	0	copy fasta	MDP1	chr14	24208943	24221066
MDP1_chr14_24208943_24221066	0/0	t0004	193	1	0	0	1	0	0	copy fasta	MDP1	chr14	24208943	24221066
ME1_chr6_83205402_83436051	0/1	t0001	1621	140	27	30	56	13	13	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0002	1622	41	14	8	13	2	4	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0003	1622	34	0	4	29	0	1	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0004	1621	21	17	0	3	0	1	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0005	1621	10	0	1	6	0	3	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0006	1621	10	1	7	2	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0007	1622	4	4	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	1/0	t0008	1620	4	0	1	1	1	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0009	1621	2	2	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0010	1622	2	0	0	2	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0011	1621	2	0	0	2	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0012	1620	1	1	0	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME1_chr6_83205402_83436051	0/0	t0013	1621	1	0	1	0	0	0	copy fasta	ME1	chr6	83205402	83436051
ME2_chr18_50874118_50959257	0/0	t0001	7273	35	3	8	19	1	4	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0002	7274	13	1	6	5	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0003	7277	12	0	1	10	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0004	7274	10	9	1	0	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0005	7274	9	0	0	8	0	1	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0006	7276	8	0	2	6	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0007	7274	7	0	4	3	0	0	copy fasta	ME2	chr18	50874118	50959257
ME2_chr18_50874118_50959257	0/0	t0008	7277	6	0	0	6	0	0	copy fasta	ME2	chr18	50874118	50959257