JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MED13_chr17_61937605_62070278	1/1	t0001	3937	227	72	31	101	2	19	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0002	3935	45	1	6	26	0	12	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0003	3938	7	0	3	0	2	2	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0004	3937	6	0	0	6	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0005	3935	4	4	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0006	3937	3	3	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0007	3937	3	0	1	2	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0008	3936	3	0	0	2	0	1	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0009	3937	2	0	0	2	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0010	3935	2	0	0	2	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0011	3938	2	0	1	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0012	3935	2	0	0	2	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0013	3934	2	0	0	2	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0014	3937	2	0	2	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0015	3937	2	1	0	0	0	1	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0016	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0017	3935	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0018	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0019	3935	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0020	3935	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0021	3922	1	0	0	0	0	1	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0022	3936	1	0	0	0	1	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0023	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0024	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0025	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0026	3937	1	0	0	1	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0027	3937	1	0	0	0	1	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0028	3937	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED13_chr17_61937605_62070278	0/0	t0029	3937	1	1	0	0	0	0	copy fasta	MED13	chr17	61937605	62070278
MED14_chrX_40643305_40740542	1/0	t0001	3632	209	49	26	111	4	18	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/1	t0002	3632	26	9	13	0	2	1	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0003	3632	3	3	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0004	3632	3	3	0	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0005	3632	2	0	0	2	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0006	3632	1	0	0	0	1	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0007	3630	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0008	3632	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0009	3632	1	0	0	0	0	1	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0010	3632	1	0	1	0	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0011	3632	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0012	3632	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED14_chrX_40643305_40740542	0/0	t0013	3633	1	0	0	1	0	0	copy fasta	MED14	chrX	40643305	40740542
MED15_chr22_20502610_20592619	1/0	t0001	985	251	81	50	81	11	27	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0002	985	64	0	7	50	2	5	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0003	985	11	1	5	0	1	4	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0004	985	4	0	0	4	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0005	985	2	1	1	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0006	985	2	0	0	0	2	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0007	985	1	1	0	0	0	0	copy fasta	MED15	chr22	20502610	20592619
MED15_chr22_20502610_20592619	0/0	t0008	985	1	0	0	1	0	0	copy fasta	MED15	chr22	20502610	20592619