JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MEGF6_chr1_3482951_3616508	0/0	t0060	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0061	2817	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0062	2817	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0063	2818	1	1	0	0	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF6_chr1_3482951_3616508	0/0	t0064	2818	1	0	0	1	0	0	copy fasta	MEGF6	chr1	3482951	3616508
MEGF8_chr19_42320635_42383765	1/0	t0001	2600	98	42	26	19	2	8	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/1	t0002	2599	20	1	8	2	4	4	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0003	2599	19	1	6	6	1	5	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0004	2599	6	5	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0005	2600	4	4	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0006	2600	3	0	0	3	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0007	2600	2	0	0	0	0	2	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0008	2599	2	1	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0009	2599	2	2	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0010	2599	2	2	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0011	2600	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0012	2599	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0013	2600	1	0	0	0	1	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0014	2599	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0015	2600	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0016	2600	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0017	2600	1	0	0	0	0	1	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0018	2600	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0019	2600	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0020	2599	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0021	2599	1	0	0	1	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0022	2600	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0023	2599	1	1	0	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF8_chr19_42320635_42383765	0/0	t0024	2600	1	0	1	0	0	0	copy fasta	MEGF8	chr19	42320635	42383765
MEGF9_chr9_120595811_120719470	1/0	t0001	4492	113	27	17	56	2	10	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0002	4492	106	24	20	50	3	9	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0003	4493	9	9	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0004	4492	9	0	0	9	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0005	4492	8	8	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0006	4492	7	0	0	7	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0007	4492	4	3	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0008	4492	4	4	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0009	4492	3	2	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0010	4492	3	1	1	0	1	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0011	4492	3	3	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0012	4492	3	3	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0013	4492	2	0	0	2	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0014	4492	2	0	0	2	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0015	4492	2	1	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0016	4492	1	0	0	1	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0017	4492	1	1	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0018	4492	1	0	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0019	4493	1	1	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/1	t0020	4492	1	0	0	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470
MEGF9_chr9_120595811_120719470	0/0	t0021	4492	1	0	1	0	0	0	copy fasta	MEGF9	chr9	120595811	120719470