JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPP3_chr17_43795811_43838146	0/0	t0004	1033	1	0	0	1	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	t0005	1033	1	1	0	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP3_chr17_43795811_43838146	0/0	t0006	1033	1	0	1	0	0	0	copy fasta	MPP3	chr17	43795811	43838146
MPP4_chr2_201639874_201703644	1/1	t0001	495	172	33	38	64	9	26	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0002	496	146	25	25	76	4	16	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0003	495	47	4	0	43	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0004	496	19	6	0	13	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0005	495	15	15	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0006	496	6	5	1	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0007	496	5	1	3	0	1	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0008	495	2	1	1	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0009	496	2	0	2	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0010	495	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP4_chr2_201639874_201703644	0/0	t0011	495	1	1	0	0	0	0	copy fasta	MPP4	chr2	201639874	201703644
MPP7_chr10_28045993_28308064	1/1	t0001	3408	131	29	37	42	2	19	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0002	3408	72	3	13	42	2	12	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0003	3418	32	0	3	27	0	2	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0004	3408	10	9	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0005	3407	8	8	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0006	3408	8	7	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0007	3407	7	5	2	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0008	3418	4	3	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0009	3407	3	2	1	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0010	3407	3	3	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0011	3407	2	2	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0012	3408	2	0	1	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0013	3408	2	2	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0014	3418	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0015	3407	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0016	3408	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0017	3419	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0018	3408	1	0	0	1	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0019	3407	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0020	3407	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0021	3408	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0022	3407	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0023	3408	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0024	3408	1	0	0	1	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0025	3407	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0026	3408	1	0	0	1	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0027	3408	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0028	3407	1	1	0	0	0	0	copy fasta	MPP7	chr10	28045993	28308064
MPP7_chr10_28045993_28308064	0/0	t0029	3408	1	0	0	0	0	1	copy fasta	MPP7	chr10	28045993	28308064
MPPE1_chr18_11877622_11913317	0/0	t0001	2141	45	1	18	21	0	5	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0002	2141	28	3	5	19	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	1/0	t0003	2140	23	0	12	3	2	5	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0004	2145	17	0	0	17	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0005	2134	17	1	11	2	2	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0006	2140	15	0	1	10	0	4	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0007	2145	13	0	0	13	0	0	copy fasta	MPPE1	chr18	11877622	11913317