JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPPE1_chr18_11877622_11913317	0/0	t0008	2145	12	0	1	11	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0009	2146	12	11	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0010	2136	10	0	0	10	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0011	2142	9	1	3	3	0	2	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0012	2146	5	4	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0013	2136	5	1	2	0	1	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0014	2143	5	0	0	4	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0015	2142	5	0	0	5	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0016	2143	4	0	1	2	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0017	2146	4	0	0	4	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0018	2144	4	0	0	4	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0019	2145	4	2	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0020	2134	4	0	2	1	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0021	2142	4	0	1	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0022	2135	4	1	1	0	0	2	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0023	2141	4	0	0	4	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0024	2130	4	0	2	0	1	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0025	2145	3	0	0	2	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0026	2134	3	1	0	1	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0027	2146	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0028	2142	3	0	0	0	0	3	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0029	2135	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0030	2146	3	1	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0031	2137	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/1	t0032	2137	3	0	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0033	2141	3	0	0	1	0	2	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0034	2134	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0035	2141	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0036	2141	3	3	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0037	2134	3	0	0	3	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0038	2141	2	0	0	0	2	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0039	2149	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0040	2147	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0041	2146	2	1	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0042	2141	2	1	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0043	2141	2	0	0	0	0	2	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0044	2147	2	1	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0045	2142	2	0	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0046	2140	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0047	2134	2	1	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0048	2140	2	0	0	0	2	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0049	2140	2	0	0	0	2	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0050	2143	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0051	2144	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0052	2141	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0053	2139	2	0	0	2	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0054	2143	2	0	1	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0055	2144	2	0	2	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0056	2140	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0057	2138	2	2	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317