JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPPE1_chr18_11877622_11913317	0/0	t0108	2134	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0109	2138	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0110	2145	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0111	2146	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0112	2144	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0113	2138	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0114	2141	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0115	2141	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0116	2135	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0117	2144	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0118	2145	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0119	2146	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0120	2147	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0121	2142	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0122	2143	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0123	2144	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0124	2143	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0125	2145	1	0	0	0	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0126	2145	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0127	2138	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0128	2138	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0129	2140	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0130	2142	1	0	0	0	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0131	2141	1	0	0	0	1	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0132	2141	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0133	2142	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0134	2137	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0135	2138	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0136	2137	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0137	2138	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0138	2134	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0139	2135	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0140	2135	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0141	2135	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0142	2135	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0143	2140	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0144	2142	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0145	2147	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0146	2136	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0147	2135	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0148	2151	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0149	2153	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0150	2148	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0151	2144	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0152	2146	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0153	2143	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0154	2141	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0155	2144	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0156	2138	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0157	2130	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317