JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MPPE1_chr18_11877622_11913317	0/0	t0158	2141	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0159	2135	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0160	2136	1	0	1	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0161	2137	1	0	0	0	0	1	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0162	2138	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0163	2137	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0164	2130	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0165	2130	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0166	2137	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0167	2142	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0168	2137	1	1	0	0	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPE1_chr18_11877622_11913317	0/0	t0169	2145	1	0	0	1	0	0	copy fasta	MPPE1	chr18	11877622	11913317
MPPED1_chr22_43407014_43512848	1/0	t0001	2456	70	2	15	43	0	9	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/1	t0002	2455	50	17	15	7	4	6	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0003	2456	23	4	8	2	4	5	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0004	2454	22	5	4	6	1	6	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0005	2455	20	19	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0006	2456	13	13	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0007	2457	10	0	2	7	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0008	2454	7	4	0	2	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0009	2454	5	1	3	0	1	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0010	2455	4	1	2	0	1	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0011	2455	2	2	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0012	2454	2	0	0	0	0	2	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0013	2457	2	0	0	1	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0014	2455	2	2	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0015	2455	2	2	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0016	2455	2	0	0	0	1	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0017	2455	2	2	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0018	2454	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0019	2455	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0020	2456	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0021	2455	1	0	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0022	2454	1	0	0	0	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0023	2456	1	0	0	1	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0024	2457	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0025	2454	1	0	1	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0026	2454	1	0	0	0	0	1	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0027	2455	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0028	2456	1	1	0	0	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED1_chr22_43407014_43512848	0/0	t0029	2455	1	0	0	1	0	0	copy fasta	MPPED1	chr22	43407014	43512848
MPPED2_chr11_30405224_30591353	1/0	t0001	1678	102	20	18	52	1	10	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/1	t0002	1678	63	12	11	30	1	8	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0003	1677	44	3	12	12	6	11	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0004	1678	19	19	0	0	0	0	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0005	1678	10	9	0	0	0	1	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0006	1678	9	1	4	4	0	0	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0007	1678	3	3	0	0	0	0	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0008	1677	2	2	0	0	0	0	copy fasta	MPPED2	chr11	30405224	30591353
MPPED2_chr11_30405224_30591353	0/0	t0009	1677	2	0	2	0	0	0	copy fasta	MPPED2	chr11	30405224	30591353