JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MSC_chr8_71836560_71849412	0/0	t0010	1318	1	1	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0011	1336	1	0	1	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0012	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0013	1336	1	1	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0014	1336	1	0	1	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0015	1336	1	1	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0016	1336	1	1	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0017	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0018	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0019	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0020	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0021	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0022	1336	1	0	0	1	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0023	1336	1	0	1	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSC_chr8_71836560_71849412	0/0	t0024	1336	1	1	0	0	0	0	copy fasta	MSC	chr8	71836560	71849412
MSGN1_chr2_17811460_17822798	1/1	t0001	758	325	92	60	114	15	42	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0002	758	17	2	9	3	2	1	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0003	758	1	0	0	1	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0004	758	1	1	0	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0005	758	1	0	1	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0006	758	1	1	0	0	0	0	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0007	758	1	0	0	0	0	1	copy fasta	MSGN1	chr2	17811460	17822798
MSGN1_chr2_17811460_17822798	0/0	t0008	758	1	0	0	0	1	0	copy fasta	MSGN1	chr2	17811460	17822798
MSH2_chr2_47398156_47488223	1/1	t0001	311	366	84	63	167	12	38	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	t0002	311	3	2	1	0	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH2_chr2_47398156_47488223	0/0	t0003	267	1	0	0	1	0	0	copy fasta	MSH2	chr2	47398156	47488223
MSH3_chr5_80649652_80881815	1/0	t0001	1030	81	3	13	56	1	7	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0002	1029	57	3	10	36	3	5	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0003	1030	44	16	10	5	4	9	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0004	1023	43	6	9	22	1	5	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0005	1030	31	26	4	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0006	1030	21	2	8	7	1	3	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0007	1030	21	2	1	8	2	8	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0008	1029	19	10	2	7	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0009	1023	7	4	1	1	1	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0010	1023	4	0	0	4	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0011	1030	4	4	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0012	1030	4	3	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0013	1029	3	0	2	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0014	1029	3	0	0	1	1	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0015	1030	2	0	2	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0016	1030	2	0	0	1	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0017	1023	2	0	1	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0018	1029	1	0	0	0	0	1	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0019	1029	1	0	0	1	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0020	1030	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0021	1023	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0022	1030	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0023	1030	1	1	0	0	0	0	copy fasta	MSH3	chr5	80649652	80881815
MSH3_chr5_80649652_80881815	0/0	t0024	1023	1	0	1	0	0	0	copy fasta	MSH3	chr5	80649652	80881815