JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTA2_chr11_62588214_62606865	0/0	t0022	1078	1	1	0	0	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA2_chr11_62588214_62606865	0/0	t0023	1078	1	0	0	1	0	0	copy fasta	MTA2	chr11	62588214	62606865
MTA3_chr2_42563632_42761946	0/0	t0001	3662	94	9	14	59	1	11	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/1	t0002	3662	90	25	26	20	5	13	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	1/0	t0003	3662	63	1	18	22	8	13	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0004	3662	15	13	2	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0005	3662	10	0	8	0	2	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0006	3662	5	4	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0007	3662	5	5	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0008	3662	4	0	3	0	0	1	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0009	3662	3	3	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0010	3662	3	2	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0011	3662	2	2	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0012	3662	2	2	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0013	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0014	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0015	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0016	3662	1	0	0	0	0	1	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0017	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0018	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0019	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0020	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0021	3662	1	1	0	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0022	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0023	3662	1	0	0	0	0	1	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0024	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0025	3662	1	0	1	0	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0026	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0027	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTA3_chr2_42563632_42761946	0/0	t0028	3662	1	0	0	1	0	0	copy fasta	MTA3	chr2	42563632	42761946
MTAP_chr9_21797636_21872081	1/0	t0001	5181	123	16	24	57	11	14	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0002	5181	64	6	19	32	0	7	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0003	5180	58	13	5	29	1	10	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0004	5181	24	23	1	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0005	5180	15	0	0	15	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0006	5180	5	0	0	5	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0007	5180	5	3	0	0	2	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0008	5179	5	5	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0009	5180	4	3	1	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0010	5181	4	0	0	4	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0011	5181	4	0	1	0	1	2	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0012	5180	4	4	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0013	5181	4	0	0	4	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0014	5180	4	0	2	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0015	5180	4	0	4	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0016	5181	3	2	1	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0017	5181	3	0	0	3	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0018	5181	3	0	1	0	1	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0019	5180	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0020	5181	2	2	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081