JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
MTAP_chr9_21797636_21872081	0/0	t0021	5167	2	2	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0022	5182	2	0	2	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0023	5180	2	2	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0024	5180	2	2	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0025	5181	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0026	5182	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/1	t0027	5181	2	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0028	5181	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0029	5181	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0030	5180	2	0	0	2	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0031	5181	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0032	5180	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0033	5180	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0034	5181	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0035	5181	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0036	5181	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0037	5181	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0038	5180	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0039	5181	1	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0040	5180	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0041	5181	1	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0042	5180	1	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0043	5180	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0044	5181	1	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0045	5181	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0046	5180	1	0	1	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0047	5180	1	0	0	0	0	1	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0048	5181	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0049	5179	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0050	5180	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0051	5179	1	0	0	1	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTAP_chr9_21797636_21872081	0/0	t0052	5180	1	1	0	0	0	0	copy fasta	MTAP	chr9	21797636	21872081
MTARC1_chr1_220781913_220824659	0/0	t0001	6210	81	5	13	48	1	14	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0002	6274	76	12	22	35	2	5	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	1/0	t0003	6274	59	1	5	43	2	7	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/1	t0004	6274	46	13	8	17	5	2	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0005	6274	29	2	9	12	1	5	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0006	6274	20	20	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0007	6274	12	0	0	12	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0008	6274	12	11	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0009	6274	8	0	1	7	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0010	6274	7	0	2	0	3	2	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0011	6210	6	0	4	0	2	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0012	6274	6	6	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0013	6274	6	5	1	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0014	6210	5	5	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0015	6274	3	0	2	0	0	1	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0016	6274	3	0	0	3	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0017	6274	2	0	0	2	0	0	copy fasta	MTARC1	chr1	220781913	220824659
MTARC1_chr1_220781913_220824659	0/0	t0018	6274	2	2	0	0	0	0	copy fasta	MTARC1	chr1	220781913	220824659