JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
N4BP2L1_chr13_32395723_32433130	0/0	t0023	2265	1	0	1	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0024	2264	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0025	2264	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0026	2264	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0027	2265	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0028	2264	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0029	2264	1	0	0	0	0	1	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0030	2267	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0031	2265	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0032	2268	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0033	2268	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0034	2268	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0035	2268	1	1	0	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0036	2268	1	0	1	0	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0037	2268	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0038	2268	1	0	0	0	0	1	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L1_chr13_32395723_32433130	0/0	t0039	2268	1	0	0	1	0	0	copy fasta	N4BP2L1	chr13	32395723	32433130
N4BP2L2_chr13_32505292_32543795	0/0	t0001	7686	86	5	12	48	6	15	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	1/0	t0002	7689	63	2	19	33	0	8	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/1	t0003	7687	51	3	12	26	4	5	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0004	7688	42	3	7	31	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0005	7689	26	18	3	1	0	4	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0006	7687	14	6	1	5	0	2	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0007	7688	10	9	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0008	7688	6	6	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0009	7692	6	5	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0010	7692	6	6	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0011	7686	5	1	3	0	1	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0012	7688	4	0	0	4	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0013	7691	4	4	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0014	7691	3	2	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0015	7690	3	0	0	2	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0016	7691	3	3	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0017	7690	2	1	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0018	7686	2	2	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0019	7689	2	0	0	1	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0020	7689	2	0	0	0	0	2	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0021	7690	2	0	0	1	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0022	7685	2	0	0	2	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0023	7686	2	0	0	2	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0024	7687	2	0	2	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0025	7688	2	0	0	2	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0026	7691	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0027	7689	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0028	7688	1	0	0	1	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0029	7690	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0030	7686	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0031	7689	1	0	0	0	0	1	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0032	7687	1	0	1	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795
N4BP2L2_chr13_32505292_32543795	0/0	t0033	7686	1	1	0	0	0	0	copy fasta	N4BP2L2	chr13	32505292	32543795