JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
N4BP2_chr4_40051850_40163252	0/0	t0065	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0066	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0067	4408	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0068	4396	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0069	4397	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0070	4397	1	0	1	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0071	4397	1	0	0	0	0	1	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0072	4397	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0073	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0074	4408	1	0	0	0	1	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0075	4408	1	0	0	1	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0076	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0077	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0078	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0079	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP2_chr4_40051850_40163252	0/0	t0080	4408	1	1	0	0	0	0	copy fasta	N4BP2	chr4	40051850	40163252
N4BP3_chr5_178108532_178131081	0/1	t0001	4351	101	12	31	38	4	15	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0002	4351	72	1	9	46	2	14	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0003	4351	72	1	12	45	4	10	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0004	4351	56	19	8	26	0	3	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0005	4351	20	0	0	19	0	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0006	4351	16	10	1	1	3	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0007	4351	8	3	1	2	1	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0008	4351	7	0	6	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0009	4351	6	5	1	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0010	4351	5	5	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0011	4351	5	5	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0012	4351	4	0	4	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0013	4351	3	0	3	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0014	4351	3	3	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0015	4351	3	3	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0016	4351	3	3	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0017	4351	3	3	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0018	4351	3	3	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0019	4351	3	1	0	0	1	1	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0020	4351	3	0	0	3	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0021	4351	2	0	0	2	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0022	4351	2	2	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0023	4351	2	1	0	0	1	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0024	4351	2	2	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0025	4351	2	0	0	2	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0026	4351	2	0	0	2	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0027	4351	2	2	0	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0028	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0029	4351	1	0	1	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0030	4351	1	0	1	0	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0031	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0032	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0033	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081
N4BP3_chr5_178108532_178131081	0/0	t0034	4351	1	0	0	1	0	0	copy fasta	N4BP3	chr5	178108532	178131081