JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NAXD_chr13_110610545_110644996	0/0	t0016	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0017	1524	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0018	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0019	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0020	1526	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0021	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0022	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0023	1524	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0024	1524	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0025	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0026	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0027	1524	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0028	1526	1	0	0	0	0	1	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0029	1524	1	0	0	0	0	1	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0030	1526	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0031	1526	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0032	1526	1	0	0	1	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0033	1526	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0034	1526	1	0	1	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXD_chr13_110610545_110644996	0/0	t0035	1526	1	1	0	0	0	0	copy fasta	NAXD	chr13	110610545	110644996
NAXE_chr1_156586776_156599299	0/1	t0001	245	391	76	71	192	10	41	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	1/0	t0002	245	35	19	3	6	2	4	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	t0003	266	2	2	0	0	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	t0004	256	1	0	0	1	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	t0005	255	1	0	0	1	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	t0006	245	1	1	0	0	0	0	copy fasta	NAXE	chr1	156586776	156599299
NAXE_chr1_156586776_156599299	0/0	t0007	245	1	0	0	0	0	1	copy fasta	NAXE	chr1	156586776	156599299
NBAS_chr2_15161916_15566334	1/1	t0001	163	224	64	40	92	6	20	copy fasta	NBAS	chr2	15161916	15566334
NBDY_chrX_56724243_56824179	1/1	t0001	2138	52	14	8	21	0	7	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0002	2137	50	2	10	26	4	8	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0003	2137	23	18	3	0	0	2	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0004	2138	5	0	0	4	0	1	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0005	2136	5	5	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0006	2138	4	2	2	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0007	2137	3	0	0	3	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0008	2138	3	0	0	3	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0009	2137	3	3	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0010	2136	2	2	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0011	2139	2	0	0	2	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0012	2137	2	2	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0013	2138	1	1	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0014	2136	1	0	0	1	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0015	2139	1	0	0	1	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0016	2139	1	0	1	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0017	2137	1	1	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBDY_chrX_56724243_56824179	0/0	t0018	2137	1	1	0	0	0	0	copy fasta	NBDY	chrX	56724243	56824179
NBEAL1_chr2_203009875_203230194	0/0	t0001	8181	89	16	12	50	2	9	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/1	t0002	8181	80	5	21	39	2	12	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0003	8178	28	16	2	9	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0004	8181	18	14	4	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194