JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NBEAL1_chr2_203009875_203230194	0/0	t0005	8181	10	1	5	1	3	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0006	8180	7	0	6	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0007	8181	4	4	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0008	8178	3	2	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0009	8181	3	0	0	3	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0010	8181	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0011	8181	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0012	8181	2	0	0	0	2	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0013	8181	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0014	8181	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0015	8180	2	1	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0016	8181	2	0	0	2	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0017	8181	2	2	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0018	8181	2	0	0	2	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0019	8181	2	0	0	2	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0020	8171	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0021	10930	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0022	8178	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0023	8179	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0024	8179	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0025	8178	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0026	8178	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0027	8178	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0028	8178	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0029	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0030	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0031	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0032	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0033	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0034	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0035	8181	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0036	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0037	8180	1	0	0	0	0	1	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0038	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0039	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0040	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0041	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0042	8180	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0043	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0044	8181	1	0	0	1	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0045	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0046	8181	1	1	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	1/0	t0047	8178	1	0	0	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0048	8181	1	0	0	0	1	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL1_chr2_203009875_203230194	0/0	t0049	8181	1	0	1	0	0	0	copy fasta	NBEAL1	chr2	203009875	203230194
NBEAL2_chr3_46974666_47014701	0/1	t0001	577	152	14	29	80	5	23	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	1/0	t0002	578	127	35	25	43	6	17	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	t0003	578	35	6	5	22	1	1	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	t0004	578	30	27	3	0	0	0	copy fasta	NBEAL2	chr3	46974666	47014701
NBEAL2_chr3_46974666_47014701	0/0	t0005	578	12	4	0	7	0	1	copy fasta	NBEAL2	chr3	46974666	47014701