JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHLH2_chr1_115831377_115846126	0/0	t0006	2105	8	8	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0007	2105	2	2	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0008	2105	2	0	0	2	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0009	2105	2	2	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0010	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0011	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0012	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0013	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0014	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0015	2105	1	1	0	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0016	2105	1	0	1	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLH2_chr1_115831377_115846126	0/0	t0017	2105	1	0	1	0	0	0	copy fasta	NHLH2	chr1	115831377	115846126
NHLRC1_chr6_18115440_18127677	1/1	t0001	1051	398	58	68	208	16	46	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0002	1051	30	18	8	4	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0003	1051	8	0	3	3	0	2	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0004	1051	7	0	0	7	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0005	1051	6	6	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0006	1051	4	4	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0007	1051	3	3	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0008	1051	3	3	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0009	1051	2	2	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0010	1051	2	0	0	2	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0011	1051	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0012	1051	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0013	1051	1	1	0	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0014	1051	1	0	0	1	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC1_chr6_18115440_18127677	0/0	t0015	1051	1	0	1	0	0	0	copy fasta	NHLRC1	chr6	18115440	18127677
NHLRC2_chr10_113849661_113922194	0/0	t0001	8871	151	29	33	63	13	13	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	1/0	t0002	8871	62	11	5	40	0	5	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0003	8872	24	0	1	23	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0004	8871	12	2	7	0	0	3	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0005	8871	7	7	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0006	8871	7	6	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0007	8872	6	2	1	1	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0008	8871	5	0	0	5	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0009	8871	4	4	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0010	8873	4	0	0	4	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0011	8871	3	3	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0012	8871	3	0	1	0	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0013	8871	3	0	1	0	1	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0014	8870	3	3	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0015	8872	2	1	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0016	8871	2	2	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0017	8871	2	0	0	0	0	2	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0018	8871	2	0	1	0	1	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0019	8871	2	0	0	2	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0020	8871	2	2	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0021	8871	2	0	0	2	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0022	8871	2	0	2	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0023	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194