JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NHLRC2_chr10_113849661_113922194	0/0	t0024	8870	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0025	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0026	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0027	8870	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0028	8872	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0029	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0030	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0031	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/1	t0032	8871	1	0	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0033	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0034	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0035	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0036	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0037	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0038	8871	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0039	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0040	8891	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0041	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0042	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0043	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0044	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0045	8872	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0046	8873	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0047	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0048	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0049	8871	1	0	0	0	1	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0050	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0051	8871	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0052	8872	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0053	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0054	8872	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0055	8871	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0056	8870	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0057	8871	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0058	8872	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0059	8871	1	0	1	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0060	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0061	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0062	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0063	8871	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0064	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0065	8870	1	0	0	0	0	1	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0066	8872	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0067	8870	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0068	8870	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0069	8871	1	1	0	0	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC2_chr10_113849661_113922194	0/0	t0070	8871	1	0	0	1	0	0	copy fasta	NHLRC2	chr10	113849661	113922194
NHLRC3_chr13_39033456_39055109	0/0	t0001	2368	215	34	37	113	9	22	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0002	2369	75	26	6	31	1	11	copy fasta	NHLRC3	chr13	39033456	39055109
NHLRC3_chr13_39033456_39055109	0/0	t0003	2369	49	19	9	14	3	4	copy fasta	NHLRC3	chr13	39033456	39055109