JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NISCH_chr3_52450604_52498068	0/0	t0009	607	1	0	0	1	0	0	copy fasta	NISCH	chr3	52450604	52498068
NISCH_chr3_52450604_52498068	0/0	t0010	607	1	1	0	0	0	0	copy fasta	NISCH	chr3	52450604	52498068
NIT1_chr1_161113105_161126194	1/1	t0001	502	336	63	60	174	18	19	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	t0002	502	1	1	0	0	0	0	copy fasta	NIT1	chr1	161113105	161126194
NIT1_chr1_161113105_161126194	0/0	t0003	502	1	0	0	0	0	1	copy fasta	NIT1	chr1	161113105	161126194
NIT2_chr3_100329757_100366635	0/0	t0001	6401	91	17	6	65	0	3	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0002	6402	63	1	15	32	4	11	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0003	6403	59	5	18	19	4	13	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0004	6402	37	1	2	32	0	2	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0005	6402	31	1	15	8	0	7	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0006	6402	15	13	2	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0007	6395	5	5	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0008	6401	5	5	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0009	6402	5	0	1	3	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0010	6403	5	0	0	5	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0011	6402	4	3	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0012	6399	3	3	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0013	6402	3	3	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0014	6402	3	0	2	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0015	6401	3	0	3	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0016	6401	3	2	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0017	6401	3	1	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0018	6402	3	0	0	3	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0019	6402	2	2	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0020	6403	2	2	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0021	6401	2	0	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0022	6400	2	2	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0023	6401	2	0	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0024	6401	2	0	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0025	6403	2	2	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0026	6403	2	0	2	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0027	6403	2	0	0	1	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0028	6402	2	0	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0029	6402	2	0	0	2	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0030	6379	2	0	0	0	0	2	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0031	6402	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0032	6402	1	0	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0033	6401	1	0	0	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0034	6401	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0035	6395	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0036	6400	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0037	6402	1	0	0	0	1	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0038	6402	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0039	6401	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0040	6401	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0041	6401	1	0	0	1	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0042	6401	1	0	1	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0043	6402	1	0	0	0	0	1	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0044	6403	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635
NIT2_chr3_100329757_100366635	0/0	t0045	6403	1	1	0	0	0	0	copy fasta	NIT2	chr3	100329757	100366635