JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NLGN4X_chrX_5885042_6233867	0/0	t0004	3408	9	2	4	2	0	1	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0005	3408	5	0	3	2	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0006	3406	3	2	1	0	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0007	3408	2	0	0	2	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0008	3408	1	1	0	0	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0009	3410	1	0	0	0	0	1	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0010	3408	1	0	0	0	0	1	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4X_chrX_5885042_6233867	0/0	t0011	3406	1	0	0	1	0	0	copy fasta	NLGN4X	chrX	5885042	6233867
NLGN4Y_chrY_14519529_14850654	1/1	t0001	4684	84	16	20	26	5	15	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	t0002	4684	33	0	0	33	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	t0003	4684	2	0	0	2	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	t0004	4688	1	1	0	0	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLGN4Y_chrY_14519529_14850654	0/0	t0005	4684	1	1	0	0	0	0	copy fasta	NLGN4Y	chrY	14519529	14850654
NLK_chr17_28037677_28201381	1/0	t0001	1943	65	22	17	18	3	4	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	t0002	1945	18	7	1	6	1	3	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/1	t0003	1947	12	10	0	1	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	t0004	1953	6	0	0	6	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	t0005	1941	4	3	0	0	0	1	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	t0006	1951	2	2	0	0	0	0	copy fasta	NLK	chr17	28037677	28201381
NLK_chr17_28037677_28201381	0/0	t0007	1943	1	0	0	1	0	0	copy fasta	NLK	chr17	28037677	28201381
NLN_chr5_65717205_65834283	1/0	t0001	6538	107	11	28	44	8	15	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0002	6538	45	4	10	26	1	4	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0003	6538	22	0	5	15	0	2	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0004	6538	22	6	7	6	3	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0005	6538	19	2	0	15	0	2	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0006	6538	11	10	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0007	6537	9	4	3	0	0	2	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0008	6538	8	8	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0009	6538	8	0	6	0	0	2	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0010	6537	6	6	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0011	6538	4	1	0	0	2	1	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0012	6538	4	0	0	4	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0013	6538	4	0	0	4	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0014	6538	4	0	0	4	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0015	6538	3	3	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0016	6537	3	3	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/1	t0017	6535	3	0	1	0	0	1	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0018	6537	3	2	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0019	6538	3	0	0	3	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0020	6538	2	1	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0021	6538	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0022	6534	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0023	6538	2	1	1	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0024	6538	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0025	6538	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0026	6538	2	2	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0027	6538	2	0	0	0	0	2	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0028	6538	2	0	0	2	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0029	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283
NLN_chr5_65717205_65834283	0/0	t0030	6538	1	1	0	0	0	0	copy fasta	NLN	chr5	65717205	65834283