JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
NPIPA8_chr16_18312919_18341736	0/0	t0007	478	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0008	479	1	1	0	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0009	479	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0010	479	1	1	0	0	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPA8_chr16_18312919_18341736	0/0	t0011	479	1	0	0	1	0	0	copy fasta	NPIPA8	chr16	18312919	18341736
NPIPB11_chr16_29376310_29411711	0/0	t0001	2884	152	23	15	104	2	8	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0002	2884	132	32	33	43	9	15	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	1/1	t0003	2884	39	2	23	0	3	9	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0004	2884	16	1	0	10	0	5	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0005	2884	15	0	0	15	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0006	2884	13	0	0	13	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0007	2884	8	8	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0008	2883	7	7	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0009	2884	5	2	2	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0010	2884	4	4	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0011	2884	3	0	0	0	0	3	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0012	2884	3	0	3	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0013	2884	2	0	0	0	2	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0014	2884	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0015	2884	2	2	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0016	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0017	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0018	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0019	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0020	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0021	2869	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0022	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0023	2884	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0024	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0025	2884	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0026	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0027	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0028	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0029	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0030	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0031	2884	1	0	1	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0032	2884	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0033	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0034	2884	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0035	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0036	2884	1	0	0	1	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0037	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0038	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0039	2884	1	0	0	0	0	1	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB11_chr16_29376310_29411711	0/0	t0040	2884	1	1	0	0	0	0	copy fasta	NPIPB11	chr16	29376310	29411711
NPIPB12_chr16_29478534_29511408	0/0	t0001	821	12	0	4	7	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	1/0	t0002	819	8	0	6	0	1	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB12_chr16_29478534_29511408	0/0	t0003	821	1	0	0	1	0	0	copy fasta	NPIPB12	chr16	29478534	29511408
NPIPB13_chr16_30217897_30253479	0/0	t0001	2876	49	14	10	20	2	3	copy fasta	NPIPB13	chr16	30217897	30253479
NPIPB13_chr16_30217897_30253479	0/0	t0002	2876	26	8	10	5	2	1	copy fasta	NPIPB13	chr16	30217897	30253479