JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OBP2A_chr9_135541126_135554969	0/1	t0003	190	47	2	10	28	1	5	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	t0004	189	1	1	0	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	t0005	190	1	0	0	1	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2A_chr9_135541126_135554969	0/0	t0006	189	1	0	1	0	0	0	copy fasta	OBP2A	chr9	135541126	135554969
OBP2B_chr9_133200279_133214250	0/0	t0001	185	330	72	74	146	11	27	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	1/0	t0002	185	116	24	8	61	1	21	copy fasta	OBP2B	chr9	133200279	133214250
OBP2B_chr9_133200279_133214250	0/0	t0003	185	1	0	0	1	0	0	copy fasta	OBP2B	chr9	133200279	133214250
OBSCN_chr1_228203044_228383876	0/1	t0001	242	181	40	39	80	7	14	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	1/0	t0002	242	97	31	26	26	3	10	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	t0003	242	33	10	1	22	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	t0004	242	7	7	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSCN_chr1_228203044_228383876	0/0	t0005	242	2	2	0	0	0	0	copy fasta	OBSCN	chr1	228203044	228383876
OBSL1_chr2_219545728_219576539	1/1	t0001	415	321	78	61	135	13	32	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0002	415	19	1	6	4	1	7	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0003	414	16	3	5	7	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0004	415	9	9	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0005	416	6	0	0	2	0	4	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0006	415	2	0	1	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0007	415	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0008	415	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0009	415	1	0	1	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0010	415	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0011	415	1	1	0	0	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0012	415	1	0	0	1	0	0	copy fasta	OBSL1	chr2	219545728	219576539
OBSL1_chr2_219545728_219576539	0/0	t0013	416	1	0	0	0	0	1	copy fasta	OBSL1	chr2	219545728	219576539
OC90_chr8_132019216_132064382	1/0	t0001	355	203	50	28	91	6	27	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/1	t0002	355	192	42	45	81	8	15	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	t0003	355	8	0	0	8	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	t0004	354	4	3	1	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OC90_chr8_132019216_132064382	0/0	t0005	354	1	1	0	0	0	0	copy fasta	OC90	chr8	132019216	132064382
OCA2_chr15_27749875_28104315	1/1	t0001	627	102	43	23	11	4	19	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	t0002	627	4	3	1	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	t0003	627	1	0	0	1	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	t0004	627	1	0	0	0	0	1	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	t0005	627	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCA2_chr15_27749875_28104315	0/0	t0006	627	1	1	0	0	0	0	copy fasta	OCA2	chr15	27749875	28104315
OCEL1_chr19_17221226_17234219	1/0	t0001	317	425	92	77	196	15	44	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/1	t0002	317	16	5	3	0	3	4	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	t0003	317	1	0	0	1	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	t0004	317	1	1	0	0	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCEL1_chr19_17221226_17234219	0/0	t0005	317	1	0	0	1	0	0	copy fasta	OCEL1	chr19	17221226	17234219
OCIAD1_chr4_48826088_48866815	1/1	t0001	1221	316	60	55	148	14	37	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	t0002	1221	12	1	5	1	2	3	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	t0003	1221	10	10	0	0	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	t0004	1221	2	0	0	2	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	t0005	1221	1	0	0	1	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD1_chr4_48826088_48866815	0/0	t0006	1221	1	1	0	0	0	0	copy fasta	OCIAD1	chr4	48826088	48866815
OCIAD2_chr4_48880019_48911774	0/0	t0001	649	172	41	27	76	5	23	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	0/1	t0002	649	145	14	29	85	5	11	copy fasta	OCIAD2	chr4	48880019	48911774
OCIAD2_chr4_48880019_48911774	1/0	t0003	645	41	21	10	1	4	4	copy fasta	OCIAD2	chr4	48880019	48911774