JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPCML_chr11_132409981_133537501	0/0	t0030	5390	1	0	1	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0031	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPCML_chr11_132409981_133537501	0/0	t0032	5390	1	1	0	0	0	0	copy fasta	OPCML	chr11	132409981	133537501
OPHN1_chrX_68037344_68438495	1/0	t0001	5161	61	0	13	34	4	9	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0002	5160	24	14	1	9	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/1	t0003	5162	18	11	3	0	1	2	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0004	5161	11	9	2	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0005	5160	6	6	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0006	5160	5	3	2	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0007	5162	4	4	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0008	5161	2	2	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0009	5162	2	1	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0010	5160	2	0	0	0	0	2	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0011	5160	1	0	0	1	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0012	5163	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0013	5163	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0014	5162	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0015	5159	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0016	5159	1	0	0	0	0	1	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0017	5160	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0018	5161	1	0	0	0	1	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0019	5161	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0020	5161	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0021	5161	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0022	5160	1	0	1	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0023	5162	1	0	0	0	0	1	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0024	5162	1	0	0	1	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0025	5161	1	0	0	1	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0026	5162	1	0	0	0	0	1	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0027	5161	1	0	0	0	1	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0028	5160	1	0	0	1	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0029	5160	1	0	0	1	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPHN1_chrX_68037344_68438495	0/0	t0030	5162	1	1	0	0	0	0	copy fasta	OPHN1	chrX	68037344	68438495
OPLAH_chr8_144046266_144065692	1/1	t0001	154	258	37	56	108	16	39	copy fasta	OPLAH	chr8	144046266	144065692
OPLAH_chr8_144046266_144065692	0/0	t0002	154	60	57	2	0	0	1	copy fasta	OPLAH	chr8	144046266	144065692
OPN1LW_chrX_154139243_154164032	1/1	t0001	148	248	40	52	112	11	31	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0002	148	2	2	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0003	148	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0004	148	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0005	148	1	0	1	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0006	149	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0007	149	1	0	0	1	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0008	146	1	0	0	0	0	1	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0009	148	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1LW_chrX_154139243_154164032	0/0	t0010	147	1	1	0	0	0	0	copy fasta	OPN1LW	chrX	154139243	154164032
OPN1MW2_chrX_154214756_154238286	0/0	t0001	167	109	30	16	49	2	12	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	t0002	166	1	0	0	1	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW2_chrX_154214756_154238286	0/0	t0003	167	1	1	0	0	0	0	copy fasta	OPN1MW2	chrX	154214756	154238286
OPN1MW3_chrX_154252582_154276090	0/0	t0001	145	5	2	1	2	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW3_chrX_154252582_154276090	0/0	t0002	146	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090