JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OPN1MW3_chrX_154252582_154276090	0/0	t0003	144	1	1	0	0	0	0	copy fasta	OPN1MW3	chrX	154252582	154276090
OPN1MW_chrX_154177596_154201861	0/0	t0001	904	57	4	12	35	1	5	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0002	904	1	1	0	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0003	904	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0004	905	1	0	1	0	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0005	904	1	0	0	0	0	1	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0006	904	1	0	0	1	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1MW_chrX_154177596_154201861	0/0	t0007	903	1	0	0	1	0	0	copy fasta	OPN1MW	chrX	154177596	154201861
OPN1SW_chr7_128767485_128780794	1/1	t0001	69	388	92	84	156	16	38	copy fasta	OPN1SW	chr7	128767485	128780794
OPN3_chr1_241588124_241645369	0/0	t0001	1420	208	34	29	113	9	23	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0002	1421	60	15	11	22	3	9	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0003	1420	33	15	4	7	0	7	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	1/0	t0004	1420	31	4	3	20	2	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0005	1420	23	4	8	5	1	5	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0006	1420	11	11	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0007	1421	9	0	2	7	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0008	1421	8	6	2	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0009	1421	3	0	3	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0010	1420	3	0	0	3	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0011	1420	2	2	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0012	1420	2	2	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0013	1420	2	2	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0014	1421	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0015	1420	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0016	1420	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0017	1420	1	0	0	0	0	1	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/1	t0018	1420	1	0	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0019	1420	1	1	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0020	1420	1	0	1	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0021	1420	1	0	1	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0022	1420	1	0	1	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0023	1420	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0024	1420	1	1	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0025	1420	1	0	1	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0026	1420	1	0	0	1	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0027	1420	1	1	0	0	0	0	copy fasta	OPN3	chr1	241588124	241645369
OPN3_chr1_241588124_241645369	0/0	t0028	1420	1	0	0	0	1	0	copy fasta	OPN3	chr1	241588124	241645369
OPN4_chr10_86649547_86671460	0/1	t0001	947	184	49	35	62	12	25	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0002	947	121	13	13	80	1	14	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0003	947	79	21	17	38	2	1	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0004	947	18	0	14	0	2	2	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0005	947	13	1	0	8	0	4	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0006	947	4	4	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0007	947	4	4	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0008	947	4	4	0	0	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0009	947	3	0	0	3	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0010	947	2	0	0	2	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0011	947	2	0	0	2	0	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0012	947	2	0	1	0	1	0	copy fasta	OPN4	chr10	86649547	86671460
OPN4_chr10_86649547_86671460	0/0	t0013	947	2	0	0	2	0	0	copy fasta	OPN4	chr10	86649547	86671460