JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OR4F15_chr15_101807202_101825197	0/0	t0007	1181	13	13	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0008	1181	9	0	8	1	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0009	1181	7	4	1	0	1	1	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0010	1181	4	0	0	1	0	3	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0011	1185	4	4	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0012	1185	3	3	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0013	1181	3	3	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0014	1181	2	0	1	0	1	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0015	1185	2	2	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0016	1185	2	2	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0017	1181	1	0	1	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0018	1181	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0019	1185	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0020	1185	1	1	0	0	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F15_chr15_101807202_101825197	0/0	t0021	1181	1	0	0	1	0	0	copy fasta	OR4F15	chr15	101807202	101825197
OR4F17_chr19_102104_118156	1/0	t0001	1752	215	32	29	133	2	18	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0002	1752	2	0	0	2	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0003	1752	2	0	0	2	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0004	1752	2	0	1	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0005	1752	1	0	0	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0006	1752	1	0	0	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0007	1752	1	1	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0008	1752	1	1	0	0	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0009	1752	1	0	0	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F17_chr19_102104_118156	0/0	t0010	1752	1	0	0	1	0	0	copy fasta	OR4F17	chr19	102104	118156
OR4F3_chr5_181362268_181373262	0/1	t0001	57	124	10	30	67	4	12	copy fasta	OR4F3	chr5	181362268	181373262
OR4F3_chr5_181362268_181373262	0/0	t0002	57	7	2	0	5	0	0	copy fasta	OR4F3	chr5	181362268	181373262
OR4F5_chr1_60419_76585	1/0	t0001	1638	107	18	11	70	1	6	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0002	1638	59	5	9	40	1	4	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0003	1638	25	6	3	8	3	5	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0004	1638	8	6	2	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0005	1637	4	0	2	0	0	2	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0006	1638	2	0	0	2	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0007	1638	2	0	2	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0008	1638	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0009	1638	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0010	1638	1	1	0	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0011	1638	1	0	1	0	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0012	1638	1	0	0	0	1	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0013	1637	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0014	1638	1	0	0	1	0	0	copy fasta	OR4F5	chr1	60419	76585
OR4F5_chr1_60419_76585	0/0	t0015	1638	1	0	0	0	0	1	copy fasta	OR4F5	chr1	60419	76585
OR4F6_chr15_101798509_101811887	1/1	t0001	300	282	63	64	107	13	33	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	t0002	300	54	26	16	0	5	7	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	t0003	300	30	0	0	30	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	t0004	300	3	3	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	t0005	300	2	2	0	0	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4F6_chr15_101798509_101811887	0/0	t0006	300	1	0	0	1	0	0	copy fasta	OR4F6	chr15	101798509	101811887
OR4K13_chr14_20024399_20041038	0/0	t0001	4770	95	9	17	58	2	9	copy fasta	OR4K13	chr14	20024399	20041038
OR4K13_chr14_20024399_20041038	0/0	t0002	4773	92	3	18	55	6	10	copy fasta	OR4K13	chr14	20024399	20041038