JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSR1_chr2_19346485_19363623	0/0	t0009	1105	1	0	0	0	0	1	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0010	1106	1	0	0	0	1	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0011	1105	1	0	1	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0012	1106	1	1	0	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR1_chr2_19346485_19363623	0/0	t0013	1105	1	0	1	0	0	0	copy fasta	OSR1	chr2	19346485	19363623
OSR2_chr8_98939442_98957100	1/1	t0001	896	259	48	46	124	17	22	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0002	896	18	7	3	7	0	1	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0003	896	6	0	0	6	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0004	896	4	4	0	0	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0005	896	3	3	0	0	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0006	896	2	0	1	1	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0007	896	2	2	0	0	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0008	896	1	1	0	0	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0009	896	1	0	0	0	1	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0010	896	1	1	0	0	0	0	copy fasta	OSR2	chr8	98939442	98957100
OSR2_chr8_98939442_98957100	0/0	t0011	896	1	0	0	0	0	1	copy fasta	OSR2	chr8	98939442	98957100
OST4_chr2_27065472_27076654	1/1	t0001	328	336	92	68	123	18	33	copy fasta	OST4	chr2	27065472	27076654
OST4_chr2_27065472_27076654	0/0	t0002	328	1	0	0	1	0	0	copy fasta	OST4	chr2	27065472	27076654
OST4_chr2_27065472_27076654	0/0	t0003	328	1	0	0	0	0	1	copy fasta	OST4	chr2	27065472	27076654
OSTC_chr4_108645599_108672820	1/1	t0001	613	372	96	70	152	16	36	copy fasta	OSTC	chr4	108645599	108672820
OSTF1_chr9_75083514_75152265	1/0	t0001	704	82	3	17	48	5	8	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0002	705	75	3	13	50	1	8	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/1	t0003	702	69	6	13	33	4	12	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0004	705	17	5	4	4	0	4	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0005	703	14	10	4	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0006	704	14	6	5	1	2	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0007	705	12	10	1	0	1	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0008	703	12	5	4	0	0	3	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0009	706	10	8	0	1	0	1	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0010	704	9	5	1	0	0	3	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0011	702	8	0	3	3	0	2	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0012	707	7	6	0	0	0	1	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0013	704	7	5	0	1	1	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0014	705	5	0	2	1	0	2	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0015	704	4	4	0	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0016	704	4	0	0	4	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0017	706	4	0	2	2	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0018	704	3	2	1	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0019	702	2	0	2	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0020	705	2	0	0	2	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0021	702	1	1	0	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0022	703	1	0	0	1	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0023	706	1	0	1	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0024	704	1	1	0	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0025	705	1	0	0	1	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTF1_chr9_75083514_75152265	0/0	t0026	703	1	0	1	0	0	0	copy fasta	OSTF1	chr9	75083514	75152265
OSTM1_chr6_108036409_108079741	1/0	t0001	3467	132	27	23	64	6	11	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/1	t0002	3463	65	4	13	39	5	3	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0003	3468	39	4	0	34	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0004	3465	30	0	12	15	0	3	copy fasta	OSTM1	chr6	108036409	108079741