JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OSTM1_chr6_108036409_108079741	0/0	t0005	3468	14	0	3	5	0	6	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0006	3466	13	13	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0007	3466	10	0	3	2	1	4	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0008	3468	9	9	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0009	3469	6	0	0	5	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0010	3463	6	0	0	6	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0011	3468	4	1	2	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0012	3466	4	4	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0013	3463	4	4	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0014	3468	3	0	0	3	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0015	3466	2	0	2	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0016	3467	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0017	3465	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0018	3468	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0019	3467	2	0	0	2	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0020	3467	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0021	3463	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0022	3465	2	0	0	0	2	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0023	3468	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0024	3468	2	2	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0025	3465	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0026	3467	1	0	0	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0027	3466	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0028	3467	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0029	3468	1	0	0	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0030	3463	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0031	3468	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0032	3467	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0033	3465	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0034	3465	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0035	3467	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0036	3469	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0037	3469	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0038	3468	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0039	3468	1	0	0	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0040	3469	1	0	0	0	0	1	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0041	3466	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0042	3463	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0043	3467	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0044	3465	1	0	1	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0045	3464	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0046	3464	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0047	3464	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0048	3465	1	0	1	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0049	3463	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0050	3463	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0051	3463	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0052	3463	1	1	0	0	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTM1_chr6_108036409_108079741	0/0	t0053	3467	1	0	0	1	0	0	copy fasta	OSTM1	chr6	108036409	108079741
OSTN_chr3_191194241_191270615	1/1	t0001	2830	147	2	25	98	5	15	copy fasta	OSTN	chr3	191194241	191270615