JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD3_chr1_19877395_19917945	0/0	t0043	5321	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0044	5321	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0045	5319	1	0	0	0	0	1	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0046	5319	1	0	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0047	5319	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0048	5319	1	0	1	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD3_chr1_19877395_19917945	0/0	t0049	5321	1	1	0	0	0	0	copy fasta	OTUD3	chr1	19877395	19917945
OTUD4_chr4_145128650_145185589	0/0	t0001	4403	26	6	4	12	0	4	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0002	4401	21	5	3	13	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0003	4402	20	4	4	9	1	2	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0004	4409	16	0	1	13	0	2	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0005	4408	14	0	1	12	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0006	4404	13	2	0	10	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0007	4399	10	9	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0008	4406	9	0	3	6	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/1	t0009	4397	9	2	1	2	3	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0010	4406	8	4	0	4	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0011	4406	8	0	3	5	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0012	4405	8	0	3	3	1	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0013	4407	7	3	2	0	0	2	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0014	4408	7	1	4	0	1	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0015	4405	7	1	0	3	0	3	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	1/0	t0016	4397	7	5	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0017	4407	6	2	2	1	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0018	4406	5	2	1	0	1	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0019	4404	5	0	0	4	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0020	4410	4	0	1	2	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0021	4407	4	0	0	4	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0022	4404	4	3	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0023	4406	4	0	0	3	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0024	4402	4	0	2	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0025	4397	4	4	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0026	4412	3	0	2	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0027	4411	3	0	0	2	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0028	4408	3	3	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0029	4407	3	0	2	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0030	4405	3	2	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0031	4396	3	3	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0032	4409	3	0	1	1	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0033	4407	3	0	0	2	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0034	4401	3	0	1	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0035	4397	3	0	2	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0036	4399	2	1	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0037	4413	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0038	4408	2	2	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0039	4406	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0040	4405	2	0	0	0	0	2	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0041	4405	2	0	0	0	0	2	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0042	4403	2	2	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0043	4402	2	2	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589