JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD4_chr4_145128650_145185589	0/0	t0044	4410	2	0	1	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0045	4408	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0046	4408	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0047	4405	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0048	4403	2	0	2	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0049	4404	2	0	1	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0050	4402	2	0	0	2	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0051	4397	2	2	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0052	4399	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0053	4405	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0054	4416	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0055	4412	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0056	4411	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0057	4410	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0058	4408	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0059	4409	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0060	4407	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0061	4407	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0062	4407	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0063	4406	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0064	4405	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0065	4407	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0066	4406	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0067	4406	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0068	4405	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0069	4404	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0070	4405	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0071	4404	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0072	4405	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0073	4405	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0074	4403	1	0	0	0	1	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0075	4409	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0076	4397	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0077	4416	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0078	4415	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0079	4412	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0080	4410	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0081	4409	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0082	4444	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0083	4408	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0084	4408	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0085	4407	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0086	4407	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0087	4406	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0088	4406	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0089	4404	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0090	4403	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0091	4404	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0092	4404	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0093	4403	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589