JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
OTUD4_chr4_145128650_145185589	0/0	t0094	4403	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0095	4402	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0096	4401	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0097	4401	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0098	4397	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0099	4398	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0100	4397	1	0	0	0	0	1	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0101	4407	1	0	1	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0102	4399	1	1	0	0	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0103	4405	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0104	4423	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD4_chr4_145128650_145185589	0/0	t0105	4410	1	0	0	1	0	0	copy fasta	OTUD4	chr4	145128650	145185589
OTUD5_chrX_48917024_48962607	1/1	t0001	1188	245	59	43	105	8	28	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0002	1188	12	8	4	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0003	1189	2	0	0	2	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0004	1188	1	1	0	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0005	1188	1	0	0	0	0	1	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0006	1188	1	0	0	0	0	1	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0007	1187	1	1	0	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0008	1188	1	0	0	0	1	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0009	1181	1	1	0	0	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD5_chrX_48917024_48962607	0/0	t0010	1190	1	0	0	1	0	0	copy fasta	OTUD5	chrX	48917024	48962607
OTUD6A_chrX_70057457_70069179	1/1	t0001	857	215	52	34	103	3	21	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0002	857	107	21	26	41	8	11	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0003	858	4	1	0	3	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0004	856	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0005	856	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0006	858	1	1	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0007	860	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0008	857	1	1	0	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0009	857	1	0	1	0	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0010	857	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0011	857	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0012	869	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6A_chrX_70057457_70069179	0/0	t0013	855	1	0	0	1	0	0	copy fasta	OTUD6A	chrX	70057457	70069179
OTUD6B_chr8_91065344_91092093	1/1	t0001	2267	305	56	59	156	11	21	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0002	2265	17	0	0	17	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0003	2267	12	12	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0004	2267	9	9	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0005	2265	8	6	2	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0006	2267	5	0	0	0	0	5	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0007	2267	3	3	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0008	2267	3	3	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0009	2267	2	0	1	0	1	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0010	2267	1	0	0	1	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0011	2267	1	0	0	0	0	1	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0012	2267	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0013	2267	1	0	0	0	0	1	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0014	2334	1	0	0	0	0	1	copy fasta	OTUD6B	chr8	91065344	91092093
OTUD6B_chr8_91065344_91092093	0/0	t0015	2267	1	1	0	0	0	0	copy fasta	OTUD6B	chr8	91065344	91092093