JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAFAH1B1_chr17_2588654_2690615	0/0	t0008	4364	7	6	1	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0009	4357	6	0	0	5	1	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0010	4357	6	6	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0011	4355	6	1	3	1	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0012	4364	5	4	0	0	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0013	4357	2	2	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0014	4357	2	0	0	0	0	2	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0015	4364	2	0	1	0	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0016	4357	1	0	0	1	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0017	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0018	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0019	4355	1	0	0	1	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0020	4355	1	0	0	1	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0021	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0022	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0023	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0024	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0025	4357	1	0	1	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0026	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0027	4355	1	0	0	0	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0028	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0029	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0030	4355	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0031	4355	1	0	0	0	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0032	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0033	4357	1	0	0	1	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0034	4372	1	0	0	1	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0035	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0036	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0037	4357	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0038	4357	1	0	0	0	0	1	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0039	4363	1	0	1	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0040	4363	1	0	1	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0041	4364	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B1_chr17_2588654_2690615	0/0	t0042	4364	1	1	0	0	0	0	copy fasta	PAFAH1B1	chr17	2588654	2690615
PAFAH1B2_chr11_117139287_117176045	1/0	t0001	3486	75	3	8	53	1	9	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0002	3497	42	7	13	15	6	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/1	t0003	3496	35	4	9	16	1	4	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0004	3487	18	0	4	12	0	2	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0005	3491	17	0	0	17	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0006	3482	13	0	3	2	3	5	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0007	3487	11	0	1	10	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0008	3485	9	9	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0009	3478	8	0	0	8	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0010	3497	8	0	4	4	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0011	3485	8	7	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0012	3487	7	1	1	4	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0013	3498	7	0	2	0	1	4	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0014	3483	6	0	0	3	0	3	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0015	3496	6	0	0	6	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045