JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PAFAH1B2_chr11_117139287_117176045	0/0	t0066	3498	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0067	3500	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0068	3500	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0069	3476	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0070	3487	1	0	0	0	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0071	3486	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0072	3486	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0073	3489	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0074	3500	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0075	3496	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0076	3496	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0077	3497	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0078	3497	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0079	3497	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0080	3499	1	0	0	0	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0081	3501	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0082	3491	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0083	3496	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0084	3498	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0085	3501	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0086	3502	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0087	3503	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0088	3475	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0089	3500	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0090	3500	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0091	3486	1	0	0	0	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0092	3484	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0093	3487	1	0	0	0	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0094	3485	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0095	3487	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0096	3485	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0097	3485	1	0	1	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0098	3486	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0099	3486	1	0	0	0	0	1	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0100	3487	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0101	3486	1	0	0	1	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0102	3486	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0103	3487	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B2_chr11_117139287_117176045	0/0	t0104	3486	1	1	0	0	0	0	copy fasta	PAFAH1B2	chr11	117139287	117176045
PAFAH1B3_chr19_42292035_42307624	1/1	t0001	359	313	85	72	108	10	36	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH1B3_chr19_42292035_42307624	0/0	t0002	359	2	2	0	0	0	0	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH1B3_chr19_42292035_42307624	0/0	t0003	359	2	0	0	2	0	0	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH1B3_chr19_42292035_42307624	0/0	t0004	359	1	1	0	0	0	0	copy fasta	PAFAH1B3	chr19	42292035	42307624
PAFAH2_chr1_25954767_26003063	0/0	t0001	2308	106	6	26	54	8	12	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0002	2309	71	47	11	4	4	5	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0003	2308	65	15	13	29	3	5	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0004	2308	15	13	2	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0005	2308	10	9	1	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0006	2304	7	0	0	7	0	0	copy fasta	PAFAH2	chr1	25954767	26003063
PAFAH2_chr1_25954767_26003063	0/0	t0007	2308	7	5	2	0	0	0	copy fasta	PAFAH2	chr1	25954767	26003063