JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCNX2_chr1_232978435_233300725	0/0	t0004	1116	7	3	2	0	1	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0005	1117	4	2	0	0	0	2	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0006	1116	3	2	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0007	1117	2	0	0	2	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0008	1112	2	1	0	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0009	1113	2	2	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0010	1118	2	2	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0011	1112	2	2	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0012	1117	2	0	0	2	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0013	1117	2	0	1	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0014	1113	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0015	1113	1	0	0	1	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0016	1113	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0017	1112	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0018	1117	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0019	1117	1	0	0	0	0	1	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0020	1105	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0021	1117	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0022	1116	1	0	1	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0023	1118	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX2_chr1_232978435_233300725	0/0	t0024	1117	1	1	0	0	0	0	copy fasta	PCNX2	chr1	232978435	233300725
PCNX3_chr11_65610776_65642439	1/0	t0001	998	145	38	24	50	8	24	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0002	999	70	7	6	43	4	10	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0003	999	55	0	14	41	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/1	t0004	998	48	14	14	14	3	2	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0005	1000	23	12	4	7	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0006	999	15	6	1	7	1	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0007	998	14	0	0	14	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0008	998	8	6	0	2	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0009	997	5	4	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0010	997	2	2	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0011	997	2	0	0	2	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0012	999	2	2	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0013	998	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0014	997	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0015	998	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0016	997	1	0	1	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0017	1000	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0018	999	1	0	0	1	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX3_chr11_65610776_65642439	0/0	t0019	999	1	1	0	0	0	0	copy fasta	PCNX3	chr11	65610776	65642439
PCNX4_chr14_60086923_60153221	0/1	t0001	14551	71	22	10	24	4	10	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0002	14550	37	2	0	34	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0003	14544	31	20	8	0	0	3	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0004	14557	18	0	0	18	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0005	14544	13	0	1	9	0	3	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0006	14549	11	0	1	9	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0007	14551	8	0	0	8	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0008	14551	8	1	7	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0009	14547	6	0	3	2	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0010	14551	5	0	0	5	0	0	copy fasta	PCNX4	chr14	60086923	60153221