JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PCNX4_chr14_60086923_60153221	0/0	t0061	14547	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0062	14550	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0063	14544	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0064	14540	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0065	14544	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0066	14542	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0067	14544	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0068	14544	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0069	14544	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0070	14544	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0071	14544	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0072	14543	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0073	14550	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0074	14551	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0075	14545	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0076	14547	1	0	0	0	1	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0077	14544	1	0	0	1	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0078	14554	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0079	14550	1	1	0	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0080	14544	1	0	0	0	0	1	copy fasta	PCNX4	chr14	60086923	60153221
PCNX4_chr14_60086923_60153221	0/0	t0081	14544	1	0	1	0	0	0	copy fasta	PCNX4	chr14	60086923	60153221
PCOLCE2_chr3_142812874_142894083	1/1	t0001	649	175	53	32	59	8	21	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0002	649	71	21	6	40	2	2	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0003	671	38	7	15	6	4	6	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0004	649	28	0	5	21	0	2	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0005	671	11	2	5	0	2	2	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0006	649	10	0	2	3	0	5	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0007	649	3	3	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0008	649	3	0	0	3	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0009	671	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0010	649	1	0	1	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE2_chr3_142812874_142894083	0/0	t0011	649	1	1	0	0	0	0	copy fasta	PCOLCE2	chr3	142812874	142894083
PCOLCE_chr7_100597363_100613175	1/1	t0001	167	323	85	54	121	16	45	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	t0002	167	4	4	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	t0003	167	3	0	0	3	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	t0004	167	1	1	0	0	0	0	copy fasta	PCOLCE	chr7	100597363	100613175
PCOLCE_chr7_100597363_100613175	0/0	t0005	167	1	0	0	0	0	1	copy fasta	PCOLCE	chr7	100597363	100613175
PCP2_chr19_7626615_7638719	1/1	t0001	337	401	91	78	174	16	40	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	t0002	337	7	6	1	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	t0003	337	2	0	2	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	t0004	337	1	0	1	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP2_chr19_7626615_7638719	0/0	t0005	337	1	1	0	0	0	0	copy fasta	PCP2	chr19	7626615	7638719
PCP4L1_chr1_161253745_161290450	1/1	t0001	1200	289	60	51	131	10	35	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0002	1200	61	2	6	49	0	4	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0003	1200	28	11	9	0	3	5	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0004	1200	14	13	1	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0005	1200	3	3	0	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0006	1200	2	0	0	2	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0007	1200	2	2	0	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450
PCP4L1_chr1_161253745_161290450	0/0	t0008	1200	1	1	0	0	0	0	copy fasta	PCP4L1	chr1	161253745	161290450