JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE4DIP_chr1_148839428_149038016	0/0	t0013	1379	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0014	1379	1	1	0	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0015	1379	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4DIP_chr1_148839428_149038016	0/0	t0016	1379	1	0	1	0	0	0	copy fasta	PDE4DIP	chr1	148839428	149038016
PDE4D_chr5_58964038_59898726	0/0	t0001	5731	26	11	8	2	2	3	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0002	5731	10	0	3	2	2	3	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0003	5730	4	4	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0004	5736	4	4	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0005	5732	3	3	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0006	5733	3	3	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0007	5731	3	3	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0008	5730	2	0	1	0	1	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0009	5731	2	2	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0010	5732	2	1	0	1	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0011	5732	2	2	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0012	5731	2	0	0	0	0	2	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0013	5729	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0014	5733	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0015	5732	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0016	5731	1	0	0	0	1	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0017	5731	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0018	5732	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0019	5731	1	0	0	1	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0020	5736	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0021	5732	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0022	5732	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE4D_chr5_58964038_59898726	0/0	t0023	5732	1	1	0	0	0	0	copy fasta	PDE4D	chr5	58964038	59898726
PDE5A_chr4_119489403_119633804	1/0	t0001	4332	128	32	29	51	5	10	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0002	4332	87	24	12	42	2	7	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/1	t0003	4332	29	0	6	11	6	5	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0004	4332	14	0	11	3	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0005	4330	10	10	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0006	4332	7	0	0	7	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0007	4332	6	5	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0008	4332	5	1	2	0	1	1	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0009	4332	4	0	0	4	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0010	4332	4	0	0	4	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0011	4332	4	0	0	4	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0012	4332	4	4	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0013	4332	3	0	0	3	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0014	4332	3	3	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0015	4332	3	3	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0016	4332	3	0	0	3	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0017	4333	3	2	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0018	4332	2	2	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0019	4332	2	0	0	1	0	1	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0020	4332	2	0	0	2	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0021	4332	2	0	2	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0022	4332	2	2	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0023	4332	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804