JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDE5A_chr4_119489403_119633804	0/0	t0024	4332	1	0	0	1	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0025	4332	1	0	0	1	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0026	4332	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0027	4332	1	0	0	1	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0028	4332	1	0	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0029	4333	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0030	4333	1	1	0	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE5A_chr4_119489403_119633804	0/0	t0031	4332	1	0	1	0	0	0	copy fasta	PDE5A	chr4	119489403	119633804
PDE6A_chr5_149852953_149949793	0/0	t0001	3065	80	12	19	29	6	14	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/1	t0002	3063	34	2	4	23	1	3	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0003	3063	25	1	7	11	2	4	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0004	3062	16	2	5	5	1	3	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0005	3066	14	0	2	10	0	2	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0006	3062	13	12	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0007	3062	12	6	0	4	0	2	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0008	3062	9	0	7	0	1	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0009	3064	6	0	3	3	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0010	3062	6	0	0	4	1	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0011	3063	6	5	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0012	3065	5	0	0	4	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0013	3065	5	0	1	4	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0014	3066	4	0	3	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0015	3064	3	0	0	3	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0016	3063	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0017	3063	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0018	3062	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0019	3062	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0020	3065	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0021	3065	3	3	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0022	3063	2	0	0	2	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0023	3062	2	0	1	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0024	3063	2	1	0	0	1	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0025	3062	2	2	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0026	3065	2	2	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0027	3073	2	2	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0028	3065	2	0	0	2	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0029	3065	2	0	1	0	0	1	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0030	3063	2	0	1	0	1	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0031	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0032	3061	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0033	3074	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0034	3062	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0035	3063	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0036	3066	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0037	3064	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0038	3064	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0039	3063	1	1	0	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0040	3063	1	0	1	0	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0041	3062	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793
PDE6A_chr5_149852953_149949793	0/0	t0042	3065	1	0	0	1	0	0	copy fasta	PDE6A	chr5	149852953	149949793