JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDIA5_chr3_123062025_123167104	1/1	t0001	285	332	82	68	124	14	42	copy fasta	PDIA5	chr3	123062025	123167104
PDIA6_chr2_10778391_10817785	1/1	t0001	957	242	37	55	115	9	24	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0002	957	29	26	3	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0003	957	21	2	4	1	2	12	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0004	956	17	13	4	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0005	957	11	9	2	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0006	958	5	0	0	3	0	2	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0007	957	4	0	0	4	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0008	957	3	0	3	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0009	957	2	2	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0010	957	2	2	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0011	957	1	0	0	0	1	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0012	957	1	0	1	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0013	957	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0014	957	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0015	958	1	1	0	0	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIA6_chr2_10778391_10817785	0/0	t0016	957	1	0	0	1	0	0	copy fasta	PDIA6	chr2	10778391	10817785
PDIK1L_chr1_26106824_26130555	1/1	t0001	3088	215	57	35	83	11	27	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0002	3086	37	1	11	22	2	1	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0003	3088	26	2	0	24	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0004	3090	18	5	8	0	2	3	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0005	3088	15	11	4	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0006	3090	11	10	1	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0007	3089	5	5	0	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0008	3086	3	0	0	0	0	3	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0009	3090	2	2	0	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0010	3090	2	0	2	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0011	3088	1	1	0	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0012	3088	1	0	1	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0013	3088	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0014	3088	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0015	3088	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0016	3088	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0017	3087	1	0	0	0	0	1	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0018	3086	1	0	1	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0019	3086	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0020	3086	1	0	0	0	0	1	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0021	3086	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0022	3087	1	0	1	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0023	3090	1	1	0	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0024	3088	1	1	0	0	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0025	3091	1	0	0	1	0	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDIK1L_chr1_26106824_26130555	0/0	t0026	3086	1	0	0	0	1	0	copy fasta	PDIK1L	chr1	26106824	26130555
PDILT_chr16_20354175_20409737	1/1	t0001	394	386	76	82	168	16	42	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	t0002	394	13	13	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	t0003	394	5	5	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDILT_chr16_20354175_20409737	0/0	t0004	394	2	2	0	0	0	0	copy fasta	PDILT	chr16	20354175	20409737
PDK1_chr2_172551090_172613669	1/1	t0001	12762	66	3	22	21	4	14	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0002	12763	24	1	2	19	0	2	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0003	12761	16	0	3	12	0	1	copy fasta	PDK1	chr2	172551090	172613669