JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
PDK1_chr2_172551090_172613669	0/0	t0054	12761	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0055	12763	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0056	12764	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0057	12762	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0058	12762	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0059	12762	1	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0060	12761	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0061	12762	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0062	12762	1	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0063	12761	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0064	12762	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0065	12763	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0066	12762	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0067	12762	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0068	12761	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0069	12760	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0070	12762	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0071	12762	1	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0072	12761	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0073	12761	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0074	12763	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0075	12764	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0076	12762	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0077	12760	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0078	12747	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0079	12761	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0080	12760	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0081	12761	1	0	0	1	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0082	12761	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0083	12763	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0084	12726	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0085	12761	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0086	12771	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0087	12770	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0088	12772	1	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0089	12773	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0090	12771	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0091	12771	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0092	12771	1	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0093	12774	1	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0094	12773	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0095	12771	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0096	12774	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0097	12770	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0098	12768	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0099	12770	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0100	12761	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0101	12769	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0102	12761	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0103	12764	1	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669