JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PDK1_chr2_172551090_172613669	0/0	t0104	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0105	12762	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0106	12762	1	0	1	0	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0107	12763	1	0	0	0	0	1	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0108	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0109	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0110	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0111	12764	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0112	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK1_chr2_172551090_172613669	0/0	t0113	12763	1	0	0	1	0	0	copy fasta	PDK1	chr2	172551090	172613669
PDK2_chr17_50090351_50117152	0/0	t0001	2141	162	25	29	97	4	7	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0002	2141	80	4	22	43	1	10	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/1	t0003	2141	34	17	11	1	2	2	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0004	2141	29	0	0	17	0	12	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	1/0	t0005	2141	24	18	3	0	2	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0006	2141	21	2	5	1	2	11	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0007	2141	18	8	2	7	0	1	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0008	2141	7	5	0	0	0	2	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0009	2141	3	0	0	3	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0010	2141	3	3	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0011	2141	2	2	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0012	2141	1	0	0	0	1	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0013	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0014	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0015	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0016	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0017	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0018	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0019	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0020	2141	1	0	1	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0021	2141	1	1	0	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0022	2141	1	0	0	0	0	1	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0023	2141	1	0	1	0	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0024	2141	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0025	2141	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK2_chr17_50090351_50117152	0/0	t0026	2141	1	0	0	1	0	0	copy fasta	PDK2	chr17	50090351	50117152
PDK3_chrX_24460286_24539422	1/0	t0001	521	117	16	20	64	5	11	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/1	t0002	521	85	23	15	29	2	15	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0003	521	48	21	4	21	0	2	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0004	530	4	0	1	3	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0005	521	1	0	1	0	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0006	523	1	0	0	1	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0007	530	1	0	1	0	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK3_chrX_24460286_24539422	0/0	t0008	532	1	0	0	1	0	0	copy fasta	PDK3	chrX	24460286	24539422
PDK4_chr7_95578499_95601516	0/0	t0001	2367	120	5	16	83	5	11	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	1/1	t0002	2366	115	19	31	38	3	22	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0003	2365	28	11	7	4	2	4	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0004	2367	21	8	2	6	5	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0005	2386	10	9	1	0	0	0	copy fasta	PDK4	chr7	95578499	95601516
PDK4_chr7_95578499_95601516	0/0	t0006	2366	8	6	1	1	0	0	copy fasta	PDK4	chr7	95578499	95601516