JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF24_chr9_34953285_34987544	0/0	t0045	4552	1	0	1	0	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF24_chr9_34953285_34987544	0/0	t0046	4555	1	0	0	1	0	0	copy fasta	PHF24	chr9	34953285	34987544
PHF2_chr9_93571584_93684587	1/0	t0001	2102	133	31	24	59	6	12	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0002	2102	96	28	19	42	3	4	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0003	2102	30	1	8	15	3	3	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0004	2102	23	0	8	14	0	1	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/1	t0005	2102	14	0	8	4	0	1	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0006	2102	9	0	1	6	0	2	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0007	2102	8	5	1	2	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0008	2098	7	6	1	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0009	2102	6	6	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0010	2102	5	0	0	3	2	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0011	2102	3	0	0	3	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0012	2102	2	2	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0013	2102	2	2	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0014	2102	2	0	0	0	0	2	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0015	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0016	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0017	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0018	2102	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0019	2102	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0020	2102	1	0	0	0	0	1	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0021	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0022	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0023	2102	1	0	0	1	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF2_chr9_93571584_93684587	0/0	t0024	2102	1	1	0	0	0	0	copy fasta	PHF2	chr9	93571584	93684587
PHF3_chr6_63630802_63731011	0/0	t0001	12675	47	0	11	28	3	5	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0002	12670	43	3	9	26	2	3	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/1	t0003	12669	37	6	8	13	1	8	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0004	12678	24	5	7	10	1	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0005	12672	8	0	5	3	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0006	12669	8	0	0	8	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0007	12672	8	1	2	2	2	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0008	12676	8	0	4	1	0	3	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0009	12681	7	1	0	4	0	2	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0010	12673	5	0	0	4	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0011	12681	5	4	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0012	12675	5	2	0	2	1	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0013	12673	5	3	2	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0014	12670	4	4	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0015	12652	4	4	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0016	12678	4	2	0	1	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0017	12673	4	4	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0018	12684	3	2	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0019	12678	3	0	0	0	0	3	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0020	12675	3	0	0	3	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0021	12675	3	0	3	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0022	12669	3	0	0	3	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0023	12666	3	0	1	0	0	2	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0024	12679	3	3	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011