JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
PHF3_chr6_63630802_63731011	0/0	t0025	12676	3	1	0	2	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0026	12678	3	0	1	0	2	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0027	12669	2	0	1	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0028	12663	2	0	1	0	1	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0029	12671	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0030	12669	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0031	12676	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0032	12679	2	0	0	0	0	2	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0033	12673	2	2	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0034	12676	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0035	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0036	12671	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0037	12670	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0038	12667	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0039	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0040	12682	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0041	12676	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0042	12673	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0043	12670	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0044	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0045	12670	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0046	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0047	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0048	12669	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0049	12675	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0050	12670	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0051	12679	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0052	12678	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	1/0	t0053	12678	1	0	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0054	12672	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0055	12678	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0056	12678	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0057	12678	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0058	12675	1	0	0	0	1	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0059	12675	1	0	0	0	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0060	12678	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0061	12672	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0062	12678	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0063	12670	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0064	12666	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0065	12669	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0066	12669	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0067	12684	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0068	12681	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0069	12668	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0070	12669	1	0	1	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0071	12663	1	0	0	0	0	1	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0072	12669	1	0	0	1	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0073	12679	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011
PHF3_chr6_63630802_63731011	0/0	t0074	12676	1	1	0	0	0	0	copy fasta	PHF3	chr6	63630802	63731011